S PubMedBert MS MARCO

🚀 pritamdeka/S-PubMedBert-MS-MARCO

这是一个基于sentence-transformers的模型，可将句子和段落映射到768维的密集向量空间，用于聚类或语义搜索等任务。该模型在医疗/健康文本领域的信息检索任务中表现出色。

🚀 快速开始

这是一个sentence-transformers模型，它能将句子和段落映射到768维的密集向量空间，可用于聚类或语义搜索等任务。

该模型基于microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext，并使用sentence-transformers框架在MS - MARCO数据集上进行了微调，可用于医疗/健康文本领域的信息检索任务。

📦 安装指南

如果你已经安装了sentence-transformers，使用该模型会非常简单：

pip install -U sentence-transformers

💻 使用示例

基础用法

from sentence_transformers import SentenceTransformer
sentences = ["This is an example sentence", "Each sentence is converted"]

model = SentenceTransformer('pritamdeka/S-PubMedBert-MS-MARCO')
embeddings = model.encode(sentences)
print(embeddings)

高级用法

如果没有安装sentence-transformers，你可以这样使用该模型：首先，将输入数据传入transformer模型，然后对上下文词嵌入应用正确的池化操作。

from transformers import AutoTokenizer, AutoModel
import torch


#Mean Pooling - Take attention mask into account for correct averaging
def mean_pooling(model_output, attention_mask):
    token_embeddings = model_output[0] #First element of model_output contains all token embeddings
    input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float()
    return torch.sum(token_embeddings * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1), min=1e-9)


# Sentences we want sentence embeddings for
sentences = ['This is an example sentence', 'Each sentence is converted']

# Load model from HuggingFace Hub
tokenizer = AutoTokenizer.from_pretrained('pritamdeka/S-PubMedBert-MS-MARCO')
model = AutoModel.from_pretrained('pritamdeka/S-PubMedBert-MS-MARCO')

# Tokenize sentences
encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')

# Compute token embeddings
with torch.no_grad():
    model_output = model(**encoded_input)

# Perform pooling. In this case, max pooling.
sentence_embeddings = mean_pooling(model_output, encoded_input['attention_mask'])

print("Sentence embeddings:")
print(sentence_embeddings)

🔧 技术细节

训练参数

该模型使用以下参数进行训练：

数据加载器： torch.utils.data.dataloader.DataLoader，长度为31434，参数如下：

{'batch_size': 16, 'sampler': 'torch.utils.data.sampler.RandomSampler', 'batch_sampler': 'torch.utils.data.sampler.BatchSampler'}

损失函数： beir.losses.margin_mse_loss.MarginMSELoss

fit()方法的参数：

{
    "callback": null,
    "epochs": 2,
    "evaluation_steps": 10000,
    "evaluator": "sentence_transformers.evaluation.SequentialEvaluator.SequentialEvaluator",
    "max_grad_norm": 1,
    "optimizer_class": "<class 'transformers.optimization.AdamW'>",
    "optimizer_params": {
        "correct_bias": false,
        "eps": 1e-06,
        "lr": 2e-05
    },
    "scheduler": "WarmupLinear",
    "steps_per_epoch": null,
    "warmup_steps": 1000,
    "weight_decay": 0.01
}

完整模型架构

SentenceTransformer(
  (0): Transformer({'max_seq_length': 350, 'do_lower_case': False}) with Transformer model: BertModel 
  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
)

📄 许可证

本模型使用的许可证为cc - by - nc - 2.0。

📚 引用与作者

@article{deka2022improved,
  title={Improved Methods To Aid Unsupervised Evidence-Based Fact Checking For Online Health News},
  author={Deka, Pritam and Jurek-Loughrey, Anna and Deepak, P},
  journal={Journal of Data Intelligence},
  volume={3},
  number={4},
  pages={474--504},
  year={2022}
}