S BlueBERT

🚀 {MODEL_NAME}

This model is a sentence-transformers model. It maps sentences and paragraphs into a 768-dimensional dense vector space, which can be used for tasks such as clustering or semantic search.

🚀 Quick Start

This section will guide you on how to use the model in different ways.

✨ Features

• Maps sentences and paragraphs to a 768-dimensional dense vector space.
• Suitable for clustering and semantic search tasks.

📦 Installation

If you want to use this model, you need to install sentence-transformers first:

pip install -U sentence-transformers

💻 Usage Examples

Basic Usage

When you have sentence-transformers installed, you can use the model as follows:

from sentence_transformers import SentenceTransformer
sentences = ["This is an example sentence", "Each sentence is converted"]

model = SentenceTransformer('{MODEL_NAME}')
embeddings = model.encode(sentences)
print(embeddings)

Advanced Usage

Even without sentence-transformers, you can still use the model. First, pass your input through the transformer model, and then apply the appropriate pooling operation on the contextualized word embeddings.

from transformers import AutoTokenizer, AutoModel
import torch


#Mean Pooling - Take attention mask into account for correct averaging
def mean_pooling(model_output, attention_mask):
    token_embeddings = model_output[0] #First element of model_output contains all token embeddings
    input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float()
    return torch.sum(token_embeddings * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1), min=1e-9)


# Sentences we want sentence embeddings for
sentences = ['This is an example sentence', 'Each sentence is converted']

# Load model from HuggingFace Hub
tokenizer = AutoTokenizer.from_pretrained('{MODEL_NAME}')
model = AutoModel.from_pretrained('{MODEL_NAME}')

# Tokenize sentences
encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')

# Compute token embeddings
with torch.no_grad():
    model_output = model(**encoded_input)

# Perform pooling. In this case, mean pooling.
sentence_embeddings = mean_pooling(model_output, encoded_input['attention_mask'])

print("Sentence embeddings:")
print(sentence_embeddings)

📚 Documentation

Evaluation Results

For an automated evaluation of this model, see the Sentence Embeddings Benchmark: https://seb.sbert.net

Training

The model was trained with the following parameters:

DataLoader: __main__.PubmedLowMemoryLoader of length 26041 with parameters:

{'batch_size': 128}

Loss: sentence_transformers.losses.MultipleNegativesRankingLoss.MultipleNegativesRankingLoss with parameters:

{'scale': 20.0, 'similarity_fct': 'cos_sim'}

Parameters of the fit()-Method:

{
    "epochs": 1,
    "evaluation_steps": 2000,
    "evaluator": "__main__.PubmedTruePositiveIRetrievalEvaluator",
    "max_grad_norm": 1,
    "optimizer_class": "<class 'torch.optim.adamw.AdamW'>",
    "optimizer_params": {
        "lr": 2e-05
    },
    "scheduler": "WarmupLinear",
    "steps_per_epoch": null,
    "warmup_steps": 21,
    "weight_decay": 0.01
}

Full Model Architecture

SentenceTransformer(
  (0): Transformer({'max_seq_length': 128, 'do_lower_case': False}) with Transformer model: BertModel 
  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
)

Citing & Authors