S PubMedBert MedQuAD

🚀 S-PubMedBert-MedQuAD

S-PubMedBert-MedQuAD是一個句子轉換器模型，它可以將句子和段落映射到768維的密集向量空間，可用於聚類或語義搜索等任務。

🚀 快速開始

本模型有兩種使用方式，分別是使用sentence-transformers庫和不使用該庫。下面將分別介紹這兩種使用方式。

📦 安裝指南

若要使用sentence-transformers庫來調用此模型，你需要先安裝它：

pip install -U sentence-transformers

💻 使用示例

基礎用法（使用sentence-transformers庫）

from sentence_transformers import SentenceTransformer
sentences = ["This is an example sentence", "Each sentence is converted"]

model = SentenceTransformer('TimKond/S-PubMedBert-MedQuAD')
embeddings = model.encode(sentences)
print(embeddings)

高級用法（不使用sentence-transformers庫）

若不使用sentence-transformers庫，你需要先將輸入數據通過轉換器模型，然後對上下文詞嵌入應用合適的池化操作。

from transformers import AutoTokenizer, AutoModel
import torch


#Mean Pooling - Take attention mask into account for correct averaging
def mean_pooling(model_output, attention_mask):
    token_embeddings = model_output[0] #First element of model_output contains all token embeddings
    input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float()
    return torch.sum(token_embeddings * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1), min=1e-9)


# Sentences we want sentence embeddings for
sentences = ['This is an example sentence', 'Each sentence is converted']

# Load model from HuggingFace Hub
tokenizer = AutoTokenizer.from_pretrained('TimKond/S-PubMedBert-MedQuAD')
model = AutoModel.from_pretrained('TimKond/S-PubMedBert-MedQuAD')

# Tokenize sentences
encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')

# Compute token embeddings
with torch.no_grad():
    model_output = model(**encoded_input)

# Perform pooling. In this case, max pooling.
sentence_embeddings = mean_pooling(model_output, encoded_input['attention_mask'])

print("Sentence embeddings:")
print(sentence_embeddings)

📚 詳細文檔

評估結果

若要對該模型進行自動評估，請參考句子嵌入基準：https://seb.sbert.net

訓練情況

該模型使用以下參數進行訓練：

數據加載器： torch.utils.data.DataLoader，長度為82590，參數如下：

{'batch_size': 2, 'shuffle':True}

損失函數： sentence_transformers.losses.SoftmaxLoss，參數如下：

{'num_labels': 2, 'sentence_embedding_dimension': '768'}

fit()方法的參數：

{
    "callback": null,
    "epochs": 1,
    "evaluation_steps": 0,
    "evaluator": None,
    "max_grad_norm": 1,
    "optimizer_class": "<class 'transformers.optimization.AdamW'>",
    "optimizer_params": {
        "correct_bias": false,
        "eps": 1e-06,
        "lr": 2e-05
    },
    "scheduler": "WarmupLinear",
    "steps_per_epoch": null,
    "warmup_steps": 8259,
    "weight_decay": 0.01
}

完整模型架構

SentenceTransformer(
  (0): Transformer({'max_seq_length': 512, 'do_lower_case': False}) with Transformer model: BertModel 
  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
)

引用與作者

📄 許可證

本項目採用MIT許可證。