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Codontransformer

Developed by adibvafa
The ultimate tool for codon optimization, capable of converting protein sequences into DNA sequences optimized for target organisms.
Downloads 1,327
Release Time : 5/24/2024

Model Overview

Codon Transformer is a Transformer-based tool specifically designed for codon optimization, converting protein sequences into DNA sequences optimized for specific organisms. Suitable for research and applications in genetic engineering, synthetic biology, and bioinformatics.

Model Features

Multi-species optimization
Supports codon optimization for different target organisms, such as E. coli.
Transformer architecture
Utilizes the advanced BigBirdForMaskedLM model to provide high-quality codon predictions.
User-friendly interface
Offers Jupyter notebooks and Google Colab demos to simplify the usage process.
Deterministic output
Supports deterministic mode to ensure reproducible results.

Model Capabilities

Protein to DNA sequence conversion
Multi-species codon optimization
Biological sequence prediction

Use Cases

Genetic engineering
Recombinant protein expression optimization
Optimizes the expression sequence of target proteins in host organisms
Improves protein expression efficiency and yield
Synthetic biology
Artificial gene design
Designs optimized DNA sequences for synthetic biology applications
Enhances gene functionality and stability in target hosts
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